Could you Specify what exactly you are after? I ask because, as I thought about people to post and what qualified for what you were after, I didn't wonder if all miracles were a commanding of nature. For instance, nature says that dead men don't come back alive, so resurrecting someone is having a supernatural command of nature. But I don't think this is what you are after. I'm assuming you're only talking about parting waters and stopping the sun and such. But where is the line to be drawn? Anyway, here are a few to start, which may or may not be relevant...
Moses - Ex. 4-10; Ex. 15:25; Ex. 17:6/Num. 20:11
Joshua - Jos. 3; Jos. 6
Samuel - 1 Sam. 12:18
Elisha - 2 Kings 2:17; 2 Kings 3:15-20